Journal: iScience
Article Title: Identifying signatures of EV secretion in metastatic breast cancer through functional single-cell profiling
doi: 10.1016/j.isci.2023.106482
Figure Lengend Snippet: Key resources table
Article Snippet: Cancer Cell Line Encyclopedia (CCLE) Broad Institute DepMap portal ( https://depmap.org/portal/download/ ) The Cancer Genome Atlas National Cancer Institute (NCI) and National Human Genome Research Institute (NHGRI) Broad Institute FireBrowse Data Portal ( www.firebrowse.org ) The Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) Cambridge Research Institute and British Columbia Cancer Centre cbioportal for cancer genome ( www.cbioportal.org ) GEO single-cell RNA-seq This study GSE211561 GEO single-cell RNA-seq GSE180286 GSE180286 GEO single-cell RNA-seq GSE176078 GSE176078 Experimental models: Cell lines MDA-MB-231 ATCC HTB-26 MCF7 ATCC HTB-22 HCC70 ATCC CRL-2315 Software and algorithms BD RhapsodyTM WTA Analysis Pipeline Seven Bridges https://igor.sbgenomics.com/public/apps/#jiewho/bd-public-project/bd-rhapsody-wta-analysis-pipeline/ Seurat (v 3.0) Satija lab https://satijalab.org/seurat/ GraphPad Prism GraphPad V9.0 R (v 4.0.1) R R: The R Project for Statistical Computing ( r-project.org ) GSEA UC San Diego and Broad Institute GSEA ( gsea-msigdb.org ) CIBERSORTx CIBERSORTx CIBERSORTx ( stanford.edu ) ImageJ National Institutes of Health ImageJ ( nih.gov ) Tscratch Tscratch Gebäck et al., 53 Open in a separate window Key resources table .
Techniques: Recombinant, Protease Inhibitor, Membrane, Multiplexing, Amplification, BIA-KA, Luminex, Software
